Evolutionary Quantitative Genetics: Virtual Issue

Post provided by Michael Morrissey

©Dr. Jane Ogilvie, Rocky Mountain Biological Laboratory

Evolutionary quantitative genetics provides formal theoretical frameworks for quantitatively linking natural selection, genetic variation, and the rate and direction of adaptive evolution. This strong theoretical foundation has been key to guiding empirical work for a long time. For example, rather than generally understanding selection to be merely an association of traits and fitness in some general way, theory tells us that specific quantities, such as the change in mean phenotype within generations (the selection differential; Lush 1937), or the partial regressions of relative fitness on traits (direct selection gradients; Lande 1979, Lande and Arnold 1983) will relate to genetic variation and evolution in specific, informative ways.

These specific examples highlight the importance of the theoretical foundation of evolutionary quantitative genetics for informing the study of natural selection. However, this foundation also supports the study other critical (quantification of genetic variation and evolution) and complimentary (e.g., interpretation when environments, change, the role of plasticity and genetic variation in plasticity) aspects of understanding the nuts and bolts of evolutionary change. Continue reading

2016 Robert May Prize Winner: Gabriella Leighton

The Robert May Prize is awarded annually for the best paper published in Methods in Ecology and Evolution by an Early Career Researcher. We’re delighted to announce that the 2016 winner is Gabriella Leighton, for her article ‘Just Google it: assessing the use of Google Images to describe geographical variation in visible traits of organisms.

‘Just Google it’ marks an important step in converting ecology to an armchair science. Many species (e.g. owls, hawks, bears) are difficult, time-consuming, expensive and even dangerous to observe. It would be a lot easier if we didn’t have to spend time, energy and risk lives having to observe organisms in the field! Continue reading

Why Do We Need Digital Elevation Models to Infer the Local Adaptation of Alpine Plants?

Post provided by Kevin Leempoel

dsc_4214-crest-flight-27-06-11It’s not easy to characterise the local environment of species living in mountains because these habitats are highly heterogeneous. At a large scale, we typically assume that temperature varies with altitude, but at a local scale, we understand that exposure to wind or being in the shade has a great influence on climatic conditions. If you go from the south-facing to the north-facing side of a mountain, it can be easily 5°C colder. If we can feel that, so can the organisms that live up there. Plants in particular are submitted to tremendous climatic variations over a year. What we want to know is: how did they adapt to these climatic variations and how localised is their adaptation?

Overcoming the Challenges of Measuring Local Adaptation

We don’t know much about how organisms adapt locally because it’s so difficult to measure the environmental conditions that these plants are facing. Existing weather stations can’t capture micro-habitat conditions because they are few and far between. What we can do instead, is use topographic models of mountains to model their environment. After all, if orientation, slope or shade have an impact on climatic conditions, why couldn’t we use them to model local variations in temperature for example? Continue reading

Biogeography at a Global Scale: The Benefits of Distributed Experimental Networks

Post provided by Elizabeth Borer



I have always loved the Blue Marble image of Earth from the Apollo 17 mission, yet a large part of my science is focused on experimental responses at the scale of meter squared grassland plots or even individual grass plants. While I spent my early career wanting to be able to say something important about regional or global processes, I found myself feeling like generating any experimental insights into processes and ecosystem responses at larger scales would be an impossible fiction.

As a postdoc, I had the opportunity to do a multi-site study across a north-south precipitation gradient in California and jumped at it. Among other questions, I decided to ask about whether plants and insects varied similarly across sites in response to replicated experimental treatments. Yet, the idea of actually sampling – and then processing samples from – more than about four sites for more than a year or two was utterly daunting. Continue reading

Biogeography Virtual Issue

Photo © An-Yi Cheng

© An-Yi Cheng

To coincide with the International Biogeography Society’s 2017 conference in Tuscon, Arizona, we have compiled a Virtual Issue that shows off new Methods in Ecology and Evolution articles in the field from a diverse array of authors.

To truly understand how species’ distributions vary through space and time, biogeographers often have to make use of analytical techniques from a wide array of disciplines. As such, these papers cover advances in fields such as evolutionary analysis, biodiversity definitions, species distribution modelling, remote sensing and more. They also reflect the growing understanding that biogeography can include experiments and highlight the increasing number of software packages focused towards biogeography.

This Virtual Issue was compiled by Methods in Ecology and Evolution Associate Editors Pedro Peres-Neto and Will Pearse (both of whom are involved in the conference). All of the articles in this Virtual Issue are free for a limited time and we have a little bit more information about each of the papers included here: Continue reading

Lasers in the Jungle Somewhere: How Airborne LiDAR Reveals the Structure of Forests

Post provided by Phil Wilkes (PDRA, Department of Geography, University College London)

Like an X-ray, airborne LiDAR allows you to peer through the dense canopy, revealing the structure of the forest beneath. ©Robert Kerton, CSIRO

Like an X-ray, airborne LiDAR allows you to peer through the dense canopy, revealing the structure of the forest beneath. ©Robert Kerton, CSIRO

How many samples do you hope to collect on your next field assignment? 50, 100 or 1000? How about billions. It may seem overly optimistic, but that’s the reality when using Light Detection and Ranging, or LiDAR.

LiDAR works on the principle of firing hundreds of thousands of laser pulses a second that measure the distance to an intercepting surface. This harmless barrage of light creates a highly accurate 3D image of the target – whether it’s an elephant, a Cambodian temple or pedestrians walking down the street. LiDAR has made the news over recent years for its ability to unearth ancient temples through thick jungle, but for those of us with an ecological motive it is the otherwise impenetrable cloak of vegetation which is of more interest.

Airborne LiDAR in Forests

As it’s National Tree Week in the UK, the focus of this blog post will be on the application of LiDAR in forests. There are a number of techniques that use LiDAR in forests, across a range of scales, from handheld, backpack and tripod mounted terrestrial laser scanners to spaceborne instruments on the International Space Station. Continue reading

Can We Really Measure Habitat Condition From Space?

Post provided by Tom Harwood, Randall Donohue, Simon Ferrier, Tim McVicar, Graeme Newell, Matt White and Kristen Williams

Remotely sensing can see patterns of land cover, but how do we use this information to quantify human impact on biodiversity?

Remotely sensing can see patterns of land cover, but how do we use this information to quantify human impact on biodiversity? ©NASA/GSFC/Jeff Schmaltz/MODIS Land Rapid Response Team

It’s very hard to make sensible choices without sensible information. When it comes to actions around changing land use and its ecological impact though, this is often what we are forced to do. If we want to reduce the impact of human activities on natural ecosystems, we need to know how much change has already occurred and how altered an ecosystem might be from its “natural” state.

Working out which parts of the landscape have been changed and mapping the absence of natural vegetation is an achievable (though onerous) task. However, moving beyond this binary view of the world is a huge challenge. Pretty much all habitat has been modified by human influences to some extent – by, for example, wood extraction, the introduction of invasive species or livestock grazing. This means that a lot of the apparently native habitat is no longer capable of supporting its full complement of native biodiversity. Continue reading

National Tree Week Virtual Issue

mee-nationaltreeweek-cover-720pxlIn the UK, National Tree Week (26 November – 4 December) celebrates tree planting within local communities. The latest BES cross-journal Virtual Issue contains recent papers that highlight the global importance of trees and forests as habitat – for species from insects to primates – and in meeting human needs for fuel and agriculture. The selected papers also demonstrate novel methods scientists are using to study trees and forests.

National Tree Week is the UK’s largest tree celebration. It was started in 1975 by the Tree Council and has grown into an event that brings hundreds of organisations together to mark the beginning of Britain’s winter tree planting season.

This Virtual Issue was compiled by Methods in Ecology and Evolution Associate Editors Sarah Goslee and Sean McMahon. All of the articles in this Virtual Issue are free for a limited time and we have a little bit more information about each of the Methods papers included here:

Connecting Forest Patches

Sagebrush steppe in eastern Idaho, USA

© Brittany J. Teller

Landscape connectivity is important for the ecology and genetics of populations threatened by climate change and habitat fragmentation. To begin our Virtual Issue Rayfield et al. present a method for identifying a multipurpose network of forest patches that promotes both short- and long-range connectivity. Their approach can be tailored to local, regional and continental conservation initiatives to protect essential species movements that will allow biodiversity to persist in a changing climate. The authors illustrate their method in the agroecosystem bordered by the Laurentian and Appalachian mountain ranges, that surrounds Montreal.

Continue reading

Biogeographic Regions: What Are They and What Can They Tell Us?

Post provided by Leonardo Dapporto, Gianni Ciolli, Roger L.H. Dennis, Richard Fox and Tim G. Shreeve

Every species in the world has a unique geographic distribution. But many species have similar ranges. There are many things that can cause two (or more) species to have similar ranges – for example shared evolutionary histories, physical obstacles (mountains, oceans etc.) or ecological barriers limiting their dispersal. As a consequence, different regions of the globe are inhabited by different sets of living organisms.

In the mid-19th century ecologists recognised that the earth could be divided into different biogeographic regions. Alfred Russel Wallace (1823–1913) played a key role in defining and recognising biogeographic regions. He improved the existing maps of  biogeographic regions and provided basic rules to identify them. His observation that some of these regions are home to similar species, despite being far away from each other and separated by significant barriers was the inspiration for Alfred Wegener’s theory of continental drift. In more recent years regionalisation has been used to understand the spatial drivers of biological evolution and to protect those regions characterised by particularly unique flora and fauna.

The biogeographic regions identified by Alfred Russel Wallace from The Geographical Distribution of Animals (1876)

The biogeographic regions identified by Alfred Russel Wallace from The Geographical Distribution of Animals (1876)

Despite the long history of biological regionalisation, the methods to identify biogeographic regions are still being improved. We are currently working in this exciting field of research and recently published ‘A new procedure for extrapolating turnover regionalization at mid-small spatial scales, tested on British butterflies’ in Methods in Ecology and Evolution. Continue reading

Statistical Ecology Virtual Issue

StatEcolVI_WebAdAt the last ISEC, in Montpellier in 2014, an informal survey suggested that Methods in Ecology and Evolution was the most cited journal in talks. This reflects the importance of statistical methods in ecology and it is one reason for the success of the journal. For this year’s International Statistcal Ecology Conference in Seattle we have produced a virtual issue that presents some of our best recent papers which cross the divide between statistics and ecology. They range over most of the topics covered at ISEC, from statistical theory to abundance estimation and distance sampling.

We hope that Methods in Ecology and Evolution will be equally well represented in talks in Seattle, and also – just as in Montpellier – some of the work presented will find its way into the pages of the journal in the future.

Without further ado though, here is a brief overview of the articles in our Statistical Ecology Virtual Issue: Continue reading